Bioinformatics data analyst scientist

 

The Institute for Infectious Diseases (IFIK), University of Bern, Switzerland, is seeking a highly qualified and experienced staff bioinformatician to perform customer- and project-oriented genomic analyses. The new collaborator will be embedded in the Bioinformatics and Biostatistics group at IFIK.

We seek

A skilled researcher with demonstrated bioinformatic expertise, to apply and further develop bioinformatic data analysis workflows. The candidate will be responsible for conducting several projects in parallel, enabling the acquisition of a rich set of computing skills on various NGS and biology related topics.

Requirements

• postgraduate degree in bioinformatics or related field (MSc as minimal qualification)
• relevant work experience in omics and NGS data analysis: amplicon sequencing, whole genome sequencing, meta-genomics/transcriptomics
• great numerical and analytical skills
• advanced scripting skills (e.g., R/Bioconductor, Python/Perl, bash)
• at least 2 years relevant work experience with Unix (Linux) systems, including installation and troubleshooting of software
• excellent communication, team player
• detail-oriented with excellent organizational and problem-solving skills
• spoken and written fluency in English

The following qualifications are advantageous

• background in microbiology, diversity analysis, phylogenetics, phylogenomics, or related fields
• experience with both Illumina and Oxford Nanopore Technologies
• experience in clinical or medical working environment
• experience in service-oriented environments
• familiarity with workflow managers for reproducible and scalable data analyses

We offer

The IFIK provides an international, collaborative atmosphere and a multidisciplinary approach to the entire spectrum of microbiology in diagnostics, research and teaching. Opportunities to be trained specifically on emerging technologies in bioinformatics will be offered as needed.
The salary will be based on the University of Bern's system (salary and social insurance).
Percentage of salary: 100%
Starting date: May-June 2021
Duration: Two years, with possible extension

Applications until 30 April 2021 must include:
1. Curriculum Vitae, and publication list
2. Accompanying letter, including a concise description of how the listed essential qualifications are met.
3. Copy of Master/PhD degree certificates
4. Contact information of at least two referees (no need for reference letter at this stage)

Please send your application documents electronically to PD Dr. Alban Ramette (alban.ramette@ifik.unibe.ch) with the reference "NGS research WMA". Only complete applications will be considered and reviewed on an on-going basis.

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Educational specialist with experience in AI, machine learning, big data in plant sciences (20%, Scientific Assistant)

 

The PSC is a successful center of excellence in plant sciences at the Universities of Zurich and Basel, as well as ETH Zurich. For 20 years, we have coordinated and developed high-quality teaching and mentoring in the university environment and designed research programs. We organize two PhD programs within the Life Science Zurich Graduate School.

Project background

The PhD program in Plant Sciences provides training in research technologies and transferable skills for about 150 PhD students, including digital skills especially in environmental monitoring, plant breeding etc.

The position is dedicated to expanding the PSC curricula in the area of digital skills in close cooperation with the PSC PhD program coordinator. Start is June 1, 2021. The position is limited to the end of 2022.

Job description

• Expanding the curriculum in the PhD Program in Plant Sciences: organising courses in digital skills, artificial intelligence, machine learning and big data in plant sciences together with internal and external lecturers.
• Organising of a summer school in the area.
• Linking to other educational programs in digital skills organized by University of Zurich and ETH Zurich.
• Fundraising for further educational activities within the PSC programs.

Your profile

• Current or previous research background in artificial intelligence, machine learning, big data preferably in plant sciences or related areas.
• Strong didactical skill set and experiences and motivation to do own lecturing work in the programme.
• Fluent in English.
• Strong networking skills.
• Recently finished PhD.

ETH Zurich

ETH Zurich is one of the world’s leading universities specialising in science and technology. We are renowned for our excellent education, cutting-edge fundamental research and direct transfer of new knowledge into society. Over 30,000 people from more than 120 countries find our university to be a place that promotes independent thinking and an environment that inspires excellence. Located in the heart of Europe, yet forging connections all over the world, we work together to develop solutions for the global challenges of today and tomorrow.

Working, teaching and research at ETH Zurich

Get connected

Interested?

We look forward to receiving your online application until 07.05.2021. Please note that we exclusively accept applications submitted through our online application portal. Applications via email or postal services will not be considered.

Further information about the PSC can be found on our website. Questions regarding the position should be directed to Melanie Paschke, Tel +41 44 632 60 22 or email melanie.paschke@usys.ethz.ch (no applications).

Apply online now

Scientific Programmer and Computer Lab Coordinator

 

The Parallel Computing Systems (PCS) group at the Informatics Institute (IvI) of the University of Amsterdam (UvA) is looking for Scientific Programmer and Computer Lab Coordinator. The PCS group performs research on the design, programming and run-time management of multi-core and multi-processor computer systems. The modeling, analysis and optimization of the extra-functional aspects of these systems, such as performance, power/energy consumption but also the degree of productivity to design and program these systems, play a pivotal role in our work.

What are you going to do?

You will be playing an important double role within the PCS group. For about half of your time, you will be acting as a scientific programmer, helping our researchers with developing their software. This will be done in the context of the NWO-funded DSE 2.0 project, which is a collaboration with Leiden University and ASML. The DSE 2.0 project aims at developing innovative modeling, simulation and optimization techniques and software tools to help designers of complex distributed computing infrastructures embedded in industrial Cyber-Physical Systems (like ASML’s lithography machines) in the design process of the next generation of their products.

For the other half of your time, you will be assisting our lecturers by coordinating the computer labs of their courses. This will be done in continuous consultation with the lecturers who are responsible for the theoretical and didactic implementation of a course. The focus will be on courses within the MSc Software Engineering program, but may also be extended to courses from the MSc Computer Science and BSc Informatica. Your duties in this context would be: developing, preparing and adapting course material for project and practical groups, coaching and instructing teachings assistants, supervision on project and practical groups, providing feedback on (weekly) assignments, etc.

What do we require?

• Master’s degree Computer Science (or a closely related discipline);
• proven software engineering and programming skills;
• good analytical, didactical and organisational skills;
• fluency in oral and written English;
• ability to work in an international (research) team.

Preferably you have some prior expertise in one or more of the following fields: computer systems architecture, modeling and simulation, performance analysis, and system optimization.

Our offer

We offer a temporary contract for 38 hours per week for the duration of 12 months, preferably starting as soon as possible. After positive evaluation, the contract will be extended with a period of three years. The job profile Education/Research Officer is applicable.

The salary, depending on relevant experience before the beginning of the employment contract, will be €2,656 to €4,012 (scale 8-9) gross per month, based on fulltime employement (38 hours a week). In addition there is a 8% holiday allowance and 8.3% end-of-year bonus. The Collective Labour Agreement of Dutch Universities is applicable.

Are you curious about our extensive package of secondary employment benefits like our excellent opportunities for study and development? Take a look here.

Questions?

Do you have questions about this vacancy? Or do you want to know more about our organisation? Please contact:

• Prof. dr. Andy D. Pimentel
  T: +31 (0)20 525 7578
  profile-page

About the Faculty of Science and the Informatics Institute

The Faculty of Science has a student body of around 7,000, as well as 1,600 members of staff working in education, research or support services. Researchers and students at the Faculty of Science are fascinated by every aspect of how the world works, be it elementary particles, the birth of the universe or the functioning of the brain.

The mission of the Informatics Institute is to perform curiosity-driven and use-inspired fundamental research in Computer Science. The main research themes are Artificial Intelligence, Computational Science and Systems and Network Engineering. Our research involves complex information systems at large, with a focus on collaborative, data driven, computational and intelligent systems, all with a strong interactive component.

Job application

The UvA is an equal-opportunity employer. We prioritise diversity and are committed to creating an inclusive environment for everyone. We value a spirit of enquiry and perseverance, provide the space to keep asking questions, and promote a culture of curiosity and creativity.

The Informatics Institute strives for a better gender balance in its staff. We therefore strongly encourage women to apply for this position.

Do you recognize yourself in the job profile? Then we look forward to receiving your application by 21 April 2021. You may apply online by using the link below.

Applications in .pdf should include:

• a motivation letter and CV;
• BSc/MSc diplomas with course/grade transcripts.

Please mention the months (not just years) in your CV when referring to your education and work experience.

Apply now